Publicações do CEBio


Kehdy, F.S.G , Gouveia, M.H., Magalhães, W.C.S., Hormoto, A.R., Horta, B.L., Moreira, R.G., Leal, T.P., Scliar, M.O., Soares-Souza, G.B., Rodrigues-Soares, F., Araújo, G.S., Zamudio, R., Anna, H.P.S., Santos, H.C., Duarte, N.E., Fiaconne, R.L., Figueiredo, C.A., Silva, T.M., Costa, G.N.O., Beleza, S., Berg, D.E., Cabrera, L., Debortoli, G, Duarte, D., Ghirotto, S., Gilman, R.H., Gonçalves, V.F., Marrero, A.R., Muniz, Y.C., Weissensteiner, H., Yeager, M., Rodrigues, L.C., Barreto, M.L., Lima-Costa, F., Pereira, A.Cc, Rodrigues, M.R., Tarazona-Santos, E., EPIGEN Project Consortium. Origin and dynamics of admixture in Brazilians and its effect on the pattern of deleterious mutations. Proceedings of the National Academy of Sciences of the United States of America. 2015. (author as member of the EPIGEN Project Consortium). Accepted

Medeiros, J.D., Leite, L.R., Cuadros-Orellana, S., Oliveira, G. Taxonomic and functional diversity of microbial community from a mining environment. BMC Bioinformatics. 2015 16(Suppl 8):A3. Abstract PDF

Chakrabarti, A., Oehme, I., Witt, O., Oliveira, G., Sippl, W., Romier, C., Pierce, R.J., Jung, M. HDAC8, a multifaceted target for therapeutic interventions. Trends in Pharmacological Sciences. 2015. 36(7):481-492. PDF

Marek, M., Oliveira, G., Pierce, R.J., Jung, M., Sippl, W., Romier, C. Drugging the schistosome zinc-dependent HDACs: current progress and future perspectives. Future Medicinal Chemistry. Special Focus Issue: Schistosomiasis, 2015. 7(6), 783-800. PDF

Palhares, R., Drummond, M., Brasil, B., Cosenza, G., Brandão, M.G., Oliveira, G. Medicinal plants recommended by the World Health Organization: DNA barcode identification associated with chemical analyses guarantees their quality. PLoS One, 2015. 10(5):e0127866. PDF

Oliveira, G., Pierce, R.J. How has the genomics era impacted schistosomiasis drug discovery? Future Medicinal Chemistry, 2015. 7(6):685-687. PDF

Costa, P.S., Reis, M.P., Leite, L.R., Araújo, F.M.G., Salim, A.C.M., Oliveira, G., Barbosa, F., Chartone-Souza, E., Nascimento, A.M.A. Metagenome of microbial a community inhabiting the metal-rich tropical stream sediment. PLoS One, 2015. e0119465. PDF

Pereira, U.P., Bonetti, A.M., Goulart, L.R., Santos, A.R., Oliveira, G.C., Cuadros-Orellana, S., Ueira-Vieira, C. Complete mitochondrial genome sequence of Melipona scutellaris, a Brazilian stingless bee. Mitochondrial DNA. 2015. Early Online 1-2. PDF


Grossmann, S.M.C., De Oliveira, G.C., Teixeira, R., Vieira do Carmo, M.A. Stimulated And Non-Stimulated Salivary Flows Should Be Tested For The Presence Of HCV RNA In Saliva Samples From Patients With Chronic Hepatitis C. Dentistry. 4(5):232. PDF

Cabezas-Cruz, A., Lancelot, J., Caby, S., Oliveira, G., Pierce, R.J. Epigenetic control of gene function in schistosomes: a source of therapeutic targets? Front. Genet. Evolutionary and Genomic Microbiology, 2014. 5:317.  PDF

Carvalho, W.A., Domingues, R., Prata, M.C.A., Silva, M.G.V.B., Oliveira, G.C., Guimarães, S.E.F, Machado, M.A. Microarray analysis of tick-infested skin in resistant and susceptible cattle confirms the role of inflammatory pathways in immune activation and larval rejection. Veterinary Parasitology. 2014. 205:307–317. PDF

Wan, D., Ludolf, F., Alanine, D.G.W., Stretton, O., Ali, E.A., Al-Barwary, N., Wang, X., Doenhoff, M.J., Mari, A., Fitzsimmons, C.M., Dunne, D.W., Nakamura, R., Oliveira, G.C., Alcocer, M.J.C., Falcone, F.H. Use of humanised rat basophilic leukaemia cell line RS-ATL8 for the assessment of allergenicity of Schistosoma mansoni proteins. PloS NTD. 2014. 8(9): e3124. PDF

Palhares R.M., Drummond, M.G., Brasil, B.S., Krettli, A.U., Oliveira, G.C., Brandão, M.G. The use of an integrated molecular-, chemical- and biological-based approach for promoting the better use and conservation of medicinal species: A case study of Brazilian quinas. J Ethnopharmacol. 2014. (155) 815-822. PDF

Cuesta-Astroz, Y., Scholte, L.L.S., Pais, F.S., Oliveira, G., Nahum, L.A. Evolutionary analysis of the cystatin family in three Schistosoma Species. 2014. Front Genet. 2014 Jul 9(5):206. PDF

Andrade, L.F., Mourão, M.M., Geraldo, J.A., Silva, L.L., Neves, R.H., Vo;ini, A., Machado-Silva, J.R., Araújo, N., Nacif-Pimenta, R., Caffrey, C.R., Oliveira, G. Regulation of Schistosoma mansoni development and reproduction by the Mitogen-Activated Protein Kinase Signaling Pathway. PLoS Neglected Tropical Diseases. 2014, 8(6): e2949. PDF

Silverio, M.S., Rodovalho, V.R., Bonetti, A.M., Oliveira, G., Cuadros-Orellana, S., Ueira-Vieira, C., Santos, A.R. Preliminary characterization of the mitochondrial genome of Melipona scutellaris, a Brazilian stingless bee. BioMed Resaerch International.   2014. Article ID 927546.  PDF

Gava, S.G., Scholte, L.L.S., Oliveira, R.P., Oliveira, G. Heterologous Expression in Caenorhabditis elegans as an Alternative Approach to Functional Studies in Schistosoma mansoni. Front. Genet. 2014. 5:1-5. PDF

Pais, F.S., Ruy, P.C., Oliveira, G., Coimbra, R.S. Assessing the efficiency of multiple sequence alignment programs. Algorithms for Molecular Biology. 2014, 9:4. PDF

Oliveira, G. Cancer and parasitic infections: similarities and opportunities for the development of new control tools. Revista da Sociedade Brasileira de Medicina Tropical. 2014. 47(1):1-2. PDF

Gaze, S., Driguez, P., Pearson, M.S., Mendes, T., Doolan, D.L., Trieu, A., McManus, D.P., Gobert, G., Correa Oliveira, R., Cardoso, F.C., Oliveira, G., Nakajima, R., Jasinskas, A., Hung, C., Liang, L., Pablo, J., Bethony, J.M., Felgner, P.L., Loukas, A. The Schistosoma mansoni antibody immunomes for naturally resistant and chronically infected people. PLoS Pathogens. 2014. 10:e1004033.  PDF

Ludolf, F., Patrocínio, P., Correa-Oliveira, R., Gazzinelli, A., Falcone, F.H., Teixeira, A., Perales, J., Oliveira, G., Silva-Pereira, R. A. Serological screening of the Schistosoma mansoni adult worm proteome. PLoS NTD. 2014, 9:4. PDF

Batista, D.F.A., Freitas Neto, O.C., Leite, L.R., Varani, A.M., Araujo, F.M.G., Almeida, A.M., Ribeiro, S.A.M., Oliveira, G., Barrow, P.A., Berchieri Junior, A. Draft Genome Sequence of Salmonella enterica subspecies enterica serovar Gallinarum biovar Pullorum Strain FCAV198, a Brazilian chicken pathogen. Genome Announcements. 2014. 2(1):e00028-14. PDF


Cuadros-Orellana, S., Leite, L.R., Smith, A., Medeiros, J.D., Badotti, F., Fonseca, P.L.C., Vaz, A.B.M., Oliveira, G., Góes-Neto, A. Assessment of fungal diversity in the environment using metagenomics: a decade in review. Fungal Genomics and Biology. 2013. 3(2):110. PDF

Marek, M., Kannan, S., Hauser, A, Mourão, M.M., Caby, S., Cura, V., Stolfa, D.A., Schmidtkunz, K., Lancelot, J., Renaud, J., Oliveira, G., Sippl, W., Jung, M., Cavarelli, J., Pierce, R.J., Romier, C. Structural Basis for the Inhibition of Histone Deacetylase 8 (HDAC8), a Key Epigenetic Player in the Blood Fluke Schistosoma mansoni. PLoS Pathogens. 2013. PLoS Pathogens. 2013. 9 (9):|e1003645. PDF

Lancelot, J., Caby, S., Dubois-Abdesselem, F., Vanderstraete, M., Trolet, J., Oliveira, G., Bracher, F., Jung, M., Pierce, R.J. Schistosoma mansoni sirtuins: characterization and potential as chemotherapeutic targets. PLoS Neglected Tropical Diseases. 7(9):e2428. PDF

Glenn, T.C., Lance, S.L., McKee, A.M. Webster, B.L., Emery, A.M., Zerlotini, A., Oliveira, G., Rollinson, D., Faircloth, B.C. Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database. Parasite & Vectors. 2013. 6:300. PDF

Pereira, U.P., Santos, A.R., Hassan, S.S., Abjurjaile, F.F., Soares, S., Ramos, R.T.J., Carneiro, A.R., Guimarães, L.C., Almeida, S.S., Diniz, C.A.A., Barbosa, M.S., Sá, P.G., Ali, A., Bakhtiar, S.M., Dorella, F.A., Zerlotini, A., Araújo, F.M.G., Leite, L.R., Oliveira, G., Miyoshi, A., Silva, A., Azevedo, V., Figueiredo, H.C.P. Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks. Standards in Genomic Sciences. 2013, 8(2):, 188-197. PDF

Badotti, F., Vaz, A., Fonseca, P., Leite, L., Araújo, F., Salim, A., Cuadros, S., Oliveira, G., Góes-Neto, A. Fungal diversity in lignocellulosic woody plant residues from a neotropical rainforest fragment: a metagenomics approach. Páginas 106-111. Anais [do] 64º Congresso Nacional de Botânica: botânica sempre viva e XXXIII ERBOT Encontro Regional de Botânicos MG, BA e ES. Organizadores João Renato Stelmann ... [et al.]. – Belo Horizonte : Sociedade Botânica do Brasil, 2013. PDF


Silva, L.L., Marcet-Houben, M., Nahum, L.A., Zerlotini, A., Gabaldón, T., Oliveira, G. The Schistosoma mansoni Phylome: Using Evolutionary Genomics to Gain Insight into a Parasite’s Biology. BMC Genomics, 2012, 13:617.  PDF Highly accessed!

Zerlotini, A; Aguiar, E; Yu, F; Xu, H; Li, Y; Young, N; Gasser, R; Protasio, A; Berriman, M; Roos, D; Kissinger, J; Oliveira, G. SchistoDB: an updated genome resource for the three key schistosomes of humans. Nucleic Acids Research, 2012, 1–4.  PDF

Nahum, L., Mourão, M.M., Oliveira, G. New frontiers in Schistosoma genomics and transcriptomics. Journal of Parasitology Research, 2012, Article ID 849132. PDF

Torrieri, R., Oliveira, F.S., Oliveira, G., Coimbra, R.S. Automatic Assignment of Prokaryotic Genes to Functional Categories Using Literature Profiling. PLoS One, 2012, 7(10): e47436., PDF.

Santos, P.F., Ruiz, J.C., Soares, R.P.P., Moreira, D.S., Rezende, A.M., Folador, E.L., Oliveira, G., Romanha, A.J., Murta, S.M.F. Molecular characterization of the hexose transporter gene in benznidazole resistant and susceptible populations of Trypanosoma cruzi. Parasites & Vectors. 2012. 5:161. PDF

Pierce RJ, Dubois-Abdesselem F, Lancelot J, Andrade L, Oliveira G. Targeting Schistosome histone modifying enzymes for drug development. Curr Pharm Des. 2012. 18(24):3567-3578. PDF

Young, N.D.; Jex, A.R.; Li, B.; Liu, S.; Yang, L.; Xiong, Z.; Li, Y.; Cantacessi, C.; Hall, R.S.; Xu, X.; Chen, F.; Wu, X.; Zerlotini, A.; Oliveira, G.; Hofman, A.; Zhang, G.; Fang, X.; Kang, Y.; Campbell, B.E.; Loukas, A.; Ranganathan, S.; Rollinson, D.; Rinaldi, G.; Brindley, P.; Yang, H.; Wang, J.; Wang, J.; Gasser, R.B. Whole-genome sequence of Schistosoma haematobium. Nature Genetics 2012, 44:221-225. PDF

Protasio, A.V.; Tsai, I.J.; Babbage, A.; Nichol, S.; Hunt, M.; Aslett, M.A.; De Silva, N.; Velarde, G.S.; Anderson, T.J.C.; Clark, R.C.; Davidson, C.; Dillon, G.P; Holroyd, N.E.; LoVerde, P.T.; Lloyd, C.; McQuillan, J.; Oliveira, G.; Otto, T.D.; Parker-Manuel, S. J.; Quail, M.A.; Wilson, R.A.; Zerlotini, A.; Dunne, D. W.; Berriman, M. A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni. PLoS Neglected Tropical Diseases, 2012, 6(1): e1455. PDF

Mourão, M.M., Grunau, C., LoVerde, P.T., Jones, M.K., Oliveira, G. Recent advances in Schistosoma genomics. Parasite Immunol., 2012, 34:151.


Santos. A.R.; Santos, M.A.; Baumbach, J.; McCulloch, J.A.; Oliveira, G.C.; Silva, A.; Miyoshi, A.; Azevedo. A. A singular value decomposition approach for improved taxonomic classification of biological sequences. BMC Genomics 2011, 12(Suppl 4):S11. PDF

Andrade, .L., Nahum, L.A., Avelar, L.G.A., Silva, L.L., Zerlotini, A., Ruiz, J.C., Oliveira, G. Eukaryotic Protein Kinases (ePKs) of the Helminth Parasite Schistosoma mansoni.  2011. BMC Genomics 12:215. PDF

Avelar, L.G.A., Nahum, L.A., Andrade, L.F., Oliveira, G. Functional diversity of the Schistosoma mansoni tyrosine Kinases. 2011. Journal of Signal Transduction. Volume 2011, 1-11. PDF

Silva, L.L., Marcet-Houben, M., Zerlotini, A., Gabaldón, T., Oliveira, G., Nahum, L.A. Evolutionary history of expanded peptidase families in Schistosoma mansoni. 2011. Memórias do Instituto Oswaldo Cruz. 106(7): 864-877. PDF Suppl. material.

Ruiz, J.C., D'Afonseca, V., Silva, A., Ali, A., Pinto, A.C., Santos, A.R., Rocha, A.A.M.C., Lopes, D.O., Dorella, F.A., Pacheco, L.G.C., Costa, M.P., Turk, M.Z., Seyffert, N., Moraes, P.M.R.O, Soares, S.C., Almeida, S.S., Castro, T.L.P., Abreu, V.A.C., Trost, E., Baumbach, J., Tauch, A., McCulloch, J., Cerdeira, L.T., Ramos, R.T.J., Zerlotini, A., Dominitini, A., Resende, D.M., Coser, E.M., Oliveira, L.M., Pedrosa, A.L., Vieira, C.U., Guimarães, C.T., Bartholomeu, D.C., Oliveira, D.M., Santos, F.R., Rabelo, E.M., Lobo, F.P., Franco, G.R., Costa, A.F., Castro, I.M., Dias, S.R.C., Ferro, J.A., Ortega, J.M., Paiva, L.V., Goulart, L.R., Almeida, J.F., Ferro, M.I.T., Carneiro, N.P., Falcão, P.R.K., Grynberg, P., Teixeira, S.M.R., Brommonschenkel, S., Oliveira, S.C., Meyer, R., Moore, R., Miyoshi, A., Oliveira, G.C., Azevedo, V. Evidences for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains. PLoS One. 2011; 6(4): e18551. PDF

Simões, M.C., Lee, J., Djikeng, A., Cerqueira, G.C., Zerlotini, A., Silva-Pereira, R.A., Dalby, A.R., LoVerde, P., El-Sayed, N.M., Oliveira, G.  Identification of Schistosoma mansoni microRNAs.  BMC Genomics.  2011. 12-47.  PDF

Machado, M., Magalhães, W.C.S., Sene, A., Araújo, B., Faria-Campos, A.C., Chanock, S.J., Scott, L., Oliveira, G., Tarazona-Santos, E., Rodrigues, M.R. Phred-Phrap package to analyses tools: a pipeline to facilitate population genetics re-sequencing studies.  Investigative Genetics.  2011.  2:3. PDF


Coimbra, R.S., Vanderwall, D.E., Oliveira, G. Disclosing ambiguous gene aliases by automatic literature profiling. BMC Genomics. 2010. 11(Suppl 5):S3. PDF

Webster, J., Oliveira, G., Rollinson, D., Gower, C.M. Schistosome genomes: a wealth of information. Trends in Parasitology. 2010. 26:103-106. PDF

Zerlotini, A.; Oliveira, G. The contributions of the genome project for the study of schistosomiasis. Memórias do Instituto Oswaldo Cruz. 2010. 105(4):367-369. PDF

Coimbra, R.S., Artiguenave, F., Jacques, L.S.R.Z., Oliveira, G. MST (Molecular Serotyping Tool): a program for computer-assisted molecular identification of Escherichia coli and Shigella O-antigens. Journal of Clinical Microbiology. 2010. 48(5):1921-1923. PDF